BEAST Software - Bayesian Evolutionary Analysis Sampling Trees
BEAST is built on a large body of prior work and appropriate citations for individual modules, models and components will be listed when BEAST is run. BEAST-Users mailing list. Users …
First Tutorial | BEAST Documentation
An introductory tutorial to getting started with BEAST. This tutorial describes the use of BEAUti and BEAST to analyse some primate sequences and estimate a phylogenetic tree. It will take …
Estimating rates and dates from time-stamped sequences | BEAST ...
To inform BEAUti/BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option. By default all the taxa are assumed to have a date of zero …
Frequently Asked Questions | BEAST Documentation
We have renamed the release that would have been called BEAST v1.10.5 as BEAST X v10.5.0. This is to distinguish it from the independent project called BEAST 2 – see: …
Phylogeographic diffusion in discrete space | BEAST Documentation
The first step will be to convert an alignment file in fasta format into a BEAST XML input file. This is done using the program BEAUti (this stands for Bayesian Evolutionary Analysis Utility). This …
Downloading and installing BEAST on UNIX/Linux
BEAST can be downloaded from the following link: BEAST X v10.5.0-beta5 - UNIX/Linux version 46.2MB; This will download a compressed tar archive (a ‘.tgz’ file).
BEAST v1.8.4 released | BEAST Documentation
Jun 17, 2016 · Download BEAST v1.8.4 binaries for Mac, Windows and UNIX/Linux Version 1.8.4 released 17th June 2016 New Features: New structured list of citations printed to screen …
Downloading and installing BEAST on Windows
Installing BEAST. Unzip the downloaded compressed ZIP archive (currently BEAST.v10.5.0-beta5.zip). The unzipped files contain executable binaries for BEAST, BEAUti, LogCombiner, …
Installing BEAST | BEAST Documentation
Installing BEAST BEAST has been developed in Java , which allows the same code to run on any platform that has the Java software installed. We have also created packages for each of the …
BEAGLE | BEAST Documentation
Using BEAGLE with BEAST BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics package. It …